PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70470.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 175aa    MW: 19962.6 Da    PI: 4.4966
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70470.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.43.2e-25160771
       E2F_TDP  7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                  +llt+kf++ll+++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  MLOC_70470.4  1 GLLTKKFINLLKQAEDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 60
                  589*************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-25162IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-22160IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013724.0E-27160IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.75E-17261IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146601.42E-4570174No hitNo description
SuperFamilySSF1440742.88E-3373174No hitNo description
PfamPF164213.6E-3375174IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
GLLTKKFINL LKQAEDGILD LNNAAETLEV QKRRIYDITN VLEGIGLIEK TLKNRIRWKG  60
LDDSGVELDN GLSGLQTEVE NLNLQEQALD ERISDMREKL RGLTEDENSQ RWLYVTEDDI  120
KGLPCFQNET LIAIKAPHGT TLEVPDPDEA GDYLQRRYRI VLRSTLGPID VYLVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-231611374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3634620.0AK363462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015K22.
GenBankAK3663960.0AK366396.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575084.11e-117PREDICTED: transcription factor E2FA-like isoform X3
RefseqXP_014755532.11e-117PREDICTED: transcription factor E2FA-like isoform X2
SwissprotQ9FV713e-86E2FB_ARATH; Transcription factor E2FB
TrEMBLM0YLA71e-123M0YLA7_HORVD; Uncharacterized protein
STRINGMLOC_70470.21e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.22e-87E2F transcription factor 1